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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
6
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
RNA microarray
Assay category
30
DNA accessibility
6
DNA binding
2
Transcription
1
3D chromatin structure
Target of assay
9
control
3
nucleotide modification
Date released
17
May, 2021
15
February, 2023
6
November, 2020
3
December, 2017
3
November, 2019
2
August, 2021
2
March, 2020
1
December, 2019
Available data
12
bed narrowPeak
6
bam
4
tsv
3
fastq
2
bigWig
1
bedpe bed3+
1
hic
1
tagAlign
Organism
48
Homo sapiens
Biosample type
primary cell
30
cell line
15
tissue
4
in vitro differentiated cells
Organ
257
liver
157
pancreas
141
kidney
124
heart
111
connective tissue
92
bone element
67
adipose tissue
62
brain
53
eye
49
epithelium
40
musculature of body
30
blood vessel
30
vasculature
26
limb
20
lung
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
84
hg19
GRCh38
Lab
43
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
31
inconsistent ontology term
1
audit script error
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
49 results
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ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
total RNA-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
RNA microarray
cell line
EndoC_BH1
18
2
6
2
1
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
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