Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
16
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA binding
16
DNA accessibility
11
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
70
control
5
transcription factor
3
nucleotide modification
2
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
recombinant protein
Date released
47
November, 2017
21
August, 2021
16
May, 2021
10
October, 2019
6
February, 2023
6
November, 2020
4
March, 2020
4
November, 2018
3
February, 2021
3
January, 2019
2
March, 2023
2
November, 2019
1
December, 2018
1
May, 2020
1
October, 2022
Available data
68
bam
55
fastq
14
tsv
3
tagAlign
1
txt
1
vcf
Organism
123
Homo sapiens
Biosample type
786
tissue
442
primary cell
127
cell line
96
in vitro differentiated cells
7
stem cell
Organ
66
liver
34
pancreas
27
epithelium
7
kidney
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
120
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
GRCh38
Lab
95
AMP-T2D consortium
19
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
32
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
hg19
BIOSAMPLE
ASSAY
127 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
52
9
2
1
1
1
EndoC_BH1
2
16
6
3
2
2
1
Panc1
7
GM12878
6
EndoC-BH1
1
1
+ See 11 more…
See all biosamples
Download