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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
3
ATAC-seq
2
Hi-C
1
pCHi-C
Assay category
65
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
47
transcription factor
13
control
5
RNA binding protein
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
chromatin remodeller
Date released
51
November, 2017
15
August, 2021
2
March, 2020
1
February, 2021
1
January, 2018
1
November, 2019
Available data
68
bigWig
51
bam
51
fastq
46
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
tsv
Organism
71
Homo sapiens
Biosample type
132
tissue
110
primary cell
71
cell line
33
in vitro differentiated cells
Organ
67
liver
3
epithelium
3
pancreas
1
blood
1
bodily fluid
Project
71
AMP
Genome assembly (visualization)
530
hg19
GRCh38
Lab
56
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
ATAC-seq
Hi-C
pCHi-C
cell line
HepG2
65
1
1
EndoC_BH1
2
1
GM12878
1
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