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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
Assay category
46
DNA binding
Target of assay
43
transcription factor
5
RNA binding protein
3
histone
3
histone modification
2
chromatin remodeller
2
narrow histone mark
1
broad histone mark
Date released
32
November, 2017
14
August, 2021
Available data
119
bam
106
fastq
68
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
46
Homo sapiens
Biosample type
101
tissue
46
cell line
34
primary cell
4
in vitro differentiated cells
Organ
46
liver
Project
46
AMP
Genome assembly (visualization)
400
hg19
GRCh38
Lab
32
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
cell line
HepG2
46
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