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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
25
ATAC-seq
9
total RNA-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
78
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
16
February, 2023
12
August, 2021
8
February, 2018
5
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
2
March, 2020
Available data
26
bam
22
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
bedpe bed3+
4
hic
3
txt
2
bigBed narrowPeak
2
tsv
Organism
124
Homo sapiens
Biosample type
893
tissue
535
primary cell
192
cell line
124
in vitro differentiated cells
3
stem cell
Organ
42
connective tissue
8
embryo
4
epithelium
1
liver
1
pancreas
Project
124
AMP
Genome assembly (visualization)
295
hg19
GRCh38
4
hg18
Lab
70
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
5
adipocyte
19
8
1
1
neural progenitor cell
8
pancreatic endoderm
5
1
chondrocyte
5
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