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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
25
ATAC-seq
9
total RNA-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
60
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
15
control
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
16
February, 2023
14
August, 2017
12
August, 2021
6
March, 2020
4
February, 2021
4
October, 2019
2
December, 2019
Available data
26
bam
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
hic
4
tsv
3
txt
2
bigBed narrowPeak
2
ibed
Organism
106
Homo sapiens
Biosample type
821
tissue
372
primary cell
106
in vitro differentiated cells
92
cell line
6
stem cell
Organ
37
connective tissue
1
epithelium
1
pancreas
Project
106
AMP
Genome assembly (visualization)
179
hg19
GRCh38
Lab
52
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
assembly!
GRCh38
files.file_type!
fastq
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
6
5
1
adipocyte
14
8
1
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
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