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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
23
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
70
DNA binding
23
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
25
control
18
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
16
February, 2023
August, 2021
8
February, 2018
6
March, 2020
5
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
23
fastq
19
bam
15
tagAlign
14
bigWig
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
bed bed3+
4
hic
4
tsv
3
txt
2
bed narrowPeak
2
bigBed narrowPeak
2
ibed
Organism
117
Homo sapiens
Biosample type
753
tissue
551
primary cell
162
cell line
117
in vitro differentiated cells
7
stem cell
Organ
39
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
117
AMP
Genome assembly (visualization)
264
hg19
GRCh38
4
hg18
Lab
67
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
August, 2021
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
5
1
adipocyte
19
7
1
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
5
1
chondrocyte
5
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