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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
87
RNA microarray
74
ATAC-seq
28
snATAC-seq
21
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
315
DNA binding
Transcription
107
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
132
histone
132
histone modification
71
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
87
February, 2021
60
October, 2019
39
May, 2022
31
May, 2020
29
March, 2020
29
October, 2018
25
November, 2017
23
May, 2019
19
February, 2023
16
April, 2019
16
July, 2019
12
December, 2017
10
April, 2020
9
August, 2021
9
October, 2017
8
January, 2021
4
December, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
198
bam
122
tagAlign
91
fastq
85
txt
74
bed narrowPeak
60
bigWig
26
tsv
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
5
bed bed3
1
bed bed3+
1
bedpe
Organism
572
Homo sapiens
Biosample type
575
tissue
366
primary cell
187
cell line
118
in vitro differentiated cells
5
stem cell
Organ
101
liver
99
pancreas
88
bone element
65
connective tissue
64
adipose tissue
50
brain
37
musculature of body
eye
26
heart
23
limb
21
kidney
19
blood vessel
19
vasculature
13
epithelium
11
lung
11
nerve
9
spleen
7
artery
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
543
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
807
hg19
Lab
490
AMP-T2D consortium
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
7
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
assay_slims!
Transcription
organ_slims!
eye
BIOSAMPLE
ASSAY
575 results
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ChIP-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
44
45
7
3
1
1
4
liver
70
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
1
4
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