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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
102
DNA accessibility
Date released
44
February, 2023
38
May, 2022
14
October, 2019
2
January, 2018
2
March, 2019
2
March, 2020
Available data
66
bed narrowPeak
25
bigWig
19
bam
19
fastq
5
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
1
tsv
Organism
102
Homo sapiens
Biosample type
151
primary cell
102
tissue
25
in vitro differentiated cells
19
cell line
Organ
36
pancreas
28
eye
20
liver
12
epithelium
4
bone element
4
skeleton
3
adipose tissue
3
connective tissue
2
brain
1
musculature of body
1
pituitary gland
1
skin of body
Project
91
AMP
11
T1D
Genome assembly (visualization)
GRCh38
122
hg19
Lab
51
AMP-T2D consortium
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
assembly!
GRCh38
BIOSAMPLE
ASSAY
102 results
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ATAC-seq
tissue
islet of Langerhans
46
liver
20
retina
15
pigmented layer of retina
12
adipose tissue
3
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