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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
130
DNA accessibility
Date released
46
February, 2023
39
May, 2022
14
October, 2019
10
April, 2020
8
January, 2021
6
August, 2021
2
January, 2018
2
March, 2019
2
March, 2020
1
August, 2022
Available data
66
bed narrowPeak
25
bigWig
19
bam
19
fastq
5
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed narrowPeak
1
tsv
1
txt
Organism
129
Homo sapiens
Biosample type
207
primary cell
130
tissue
25
in vitro differentiated cells
19
cell line
Organ
47
pancreas
28
eye
20
liver
12
epithelium
10
lung
6
kidney
4
bone element
4
skeleton
3
adipose tissue
3
connective tissue
2
brain
2
musculature of body
1
pituitary gland
1
skin of body
Project
99
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
123
hg19
Lab
53
AMP-T2D consortium
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
130 results
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ATAC-seq
snATAC-seq
tissue
islet of Langerhans
46
7
liver
20
retina
15
pigmented layer of retina
12
lung
10
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