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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
total RNA-seq
51
ATAC-seq
26
snATAC-seq
20
single cell RNA-seq
4
MeRIP-seq
3
Hi-C
1
pCHi-C
Assay category
102
Transcription
77
DNA accessibility
3
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
66
August, 2021
64
May, 2022
19
April, 2020
18
February, 2023
8
January, 2021
4
November, 2020
3
March, 2019
3
May, 2023
2
May, 2021
Available data
63
txt
38
bed narrowPeak
25
bam
25
fastq
20
bigWig
2
hic
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
tsv
Organism
186
Homo sapiens
Biosample type
373
primary cell
187
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
67
kidney
60
pancreas
40
liver
19
lung
1
thymus
Project
141
AMP
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
43
hg19
Lab
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
assembly!
GRCh38
award.project!
KPMP
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
49
6
11
1
islet of Langerhans
12
31
6
4
2
liver
20
20
lung
10
9
pancreas
1
4
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