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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
135
total RNA-seq
127
single cell RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
262
Transcription
183
DNA binding
135
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
93
February, 2021
66
May, 2022
60
February, 2023
60
October, 2019
42
August, 2017
31
March, 2020
29
October, 2018
25
February, 2020
23
May, 2020
22
May, 2019
19
April, 2020
16
July, 2019
15
April, 2019
12
December, 2017
12
November, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
3
October, 2017
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
195
bam
159
tsv
157
txt
96
fastq
70
bed narrowPeak
52
tagAlign
29
bigWig
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bedpe
Organism
734
Homo sapiens
Biosample type
737
tissue
513
primary cell
192
cell line
95
in vitro differentiated cells
7
stem cell
Organ
121
heart
105
pancreas
95
liver
92
bone element
87
kidney
51
eye
43
brain
35
adipose tissue
35
connective tissue
28
blood vessel
28
vasculature
24
limb
20
lung
20
musculature of body
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
689
AMP
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1317
hg19
Lab
550
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
assembly!
GRCh38
award.project!
KPMP
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
737 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
11
32
46
7
4
3
1
1
4
liver
42
20
1
20
1
1
1
3
bone element
84
kidney
7
49
17
6
1
1
1
heart left ventricle
6
18
1
1
1
2
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