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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
169
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
85
RNA microarray
26
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
304
Transcription
133
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
126
August, 2017
88
February, 2021
81
October, 2019
65
May, 2022
60
February, 2023
47
September, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
December, 2019
1
January, 2019
1
November, 2019
Available data
204
bam
152
tsv
151
txt
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
5
bed bed3
1
bedpe
1
csv
Organism
906
Homo sapiens
Biosample type
909
tissue
primary cell
198
cell line
127
in vitro differentiated cells
7
stem cell
Organ
127
kidney
123
liver
122
heart
118
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
39
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
14
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
814
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1754
hg19
Lab
675
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
biosample_type!
primary cell
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
909 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
6
4
3
1
1
4
kidney
7
59
49
6
1
1
1
liver
70
1
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
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