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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
309
Transcription
195
DNA binding
135
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
132
control
64
histone
64
histone modification
39
narrow histone mark
25
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
93
February, 2021
73
August, 2017
72
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
March, 2020
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2017
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
1
October, 2017
Available data
204
bam
159
tsv
157
txt
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
794
Homo sapiens
Biosample type
796
tissue
550
primary cell
192
cell line
107
in vitro differentiated cells
7
stem cell
Organ
134
kidney
122
heart
109
pancreas
92
bone element
72
liver
59
connective tissue
58
adipose tissue
53
eye
28
blood vessel
28
vasculature
26
brain
26
limb
25
musculature of body
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
701
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1650
hg19
Lab
562
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
assembly!
GRCh38
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
796 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
37
32
46
7
4
3
1
1
4
kidney
7
64
49
6
1
1
1
bone element
84
liver
19
1
20
20
1
1
1
3
subcutaneous abdominal adipose tissue
28
3
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