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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
ChIP-seq
174
single cell RNA-seq
128
total RNA-seq
87
RNA microarray
25
ATAC-seq
24
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
302
Transcription
286
DNA binding
44
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
103
histone
103
histone modification
54
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
105
August, 2017
93
February, 2021
81
October, 2019
47
September, 2023
29
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
23
May, 2020
22
May, 2019
19
April, 2020
15
April, 2019
14
February, 2023
14
July, 2019
12
December, 2017
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
3
November, 2018
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
204
bam
159
tsv
157
txt
122
tagAlign
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
785
Homo sapiens
Biosample type
788
tissue
494
primary cell
147
cell line
125
in vitro differentiated cells
7
stem cell
Organ
133
kidney
121
heart
95
liver
92
bone element
65
connective tissue
65
pancreas
64
adipose tissue
60
brain
28
blood vessel
28
vasculature
26
eye
26
musculature of body
25
limb
20
lung
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
722
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
978
hg19
GRCh38
Lab
619
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bed narrowPeak
award.project!
T1D
BIOSAMPLE
ASSAY
788 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
islet of Langerhans
40
25
17
4
1
3
1
4
liver
62
1
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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