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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
6
total RNA-seq
3
RRBS
2
WGBS
1
ATAC-seq
Assay category
65
DNA binding
6
Transcription
5
DNA methylation
1
DNA accessibility
Target of assay
64
control
1
broad histone mark
1
histone
1
histone modification
Date released
27
October, 2018
16
August, 2017
12
December, 2017
6
May, 2022
4
December, 2018
4
September, 2017
3
November, 2018
3
October, 2017
1
January, 2019
1
March, 2019
Available data
204
bam
159
tsv
157
txt
122
tagAlign
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
76
Homo sapiens
Biosample type
178
primary cell
77
tissue
74
cell line
23
in vitro differentiated cells
1
stem cell
Organ
23
pancreas
21
liver
20
adipose tissue
20
connective tissue
8
spleen
3
brain
2
musculature of body
Project
77
AMP
Genome assembly (visualization)
GRCh38
125
hg19
Lab
70
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
total RNA-seq
RRBS
WGBS
ATAC-seq
tissue
liver
16
1
1
islet of Langerhans
5
6
1
subcutaneous adipose tissue
10
body of pancreas
8
omental fat pad
8
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