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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
7
DNA accessibility
7
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
64
August, 2021
47
September, 2023
8
February, 2021
5
April, 2019
3
December, 2019
3
May, 2023
2
July, 2019
2
October, 2019
Available data
62
txt
10
tsv
8
bam
5
csv
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
134
Homo sapiens
Biosample type
134
tissue
8
primary cell
7
cell line
Organ
134
kidney
122
heart
109
pancreas
92
bone element
72
liver
59
connective tissue
58
adipose tissue
53
eye
28
blood vessel
28
vasculature
26
brain
26
limb
25
musculature of body
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
87
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
92
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
20
AMP-T2D consortium
Audit category:
7
audit script error
assembly!
GRCh38
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
134 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
tissue
kidney
64
49
7
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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