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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
21
total RNA-seq
20
ATAC-seq
4
WGBS
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
22
DNA binding
22
Transcription
21
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
19
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
40
May, 2022
15
August, 2017
12
December, 2017
2
March, 2020
1
February, 2020
1
February, 2021
1
July, 2019
Available data
tagAlign
50
bam
28
bed narrowPeak
28
bigWig
21
fastq
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
72
Homo sapiens
Biosample type
130
cell line
72
tissue
2
primary cell
1
in vitro differentiated cells
Organ
134
kidney
122
heart
109
pancreas
92
bone element
72
liver
59
connective tissue
58
adipose tissue
53
eye
28
blood vessel
28
vasculature
26
brain
26
limb
25
musculature of body
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
241
hg19
GRCh38
Lab
40
Karen Mohlke, UNC
32
AMP-T2D consortium
assembly!
GRCh38
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
19
20
20
3
1
1
1
1
right lobe of liver
3
1
1
1
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