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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
293
ChIP-seq
164
single cell RNA-seq
133
total RNA-seq
101
ATAC-seq
87
RNA microarray
24
pCHi-C
17
snATAC-seq
11
WGBS
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
297
Transcription
293
DNA binding
123
DNA accessibility
18
DNA methylation
10
3D chromatin structure
Target of assay
180
control
114
histone
114
histone modification
65
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
100
August, 2017
93
February, 2021
81
October, 2019
64
May, 2022
60
February, 2023
47
September, 2023
31
May, 2020
29
October, 2018
28
March, 2020
25
November, 2017
23
February, 2020
21
May, 2019
16
April, 2019
12
December, 2017
12
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
May, 2021
1
August, 2022
1
January, 2018
1
January, 2019
1
November, 2019
Available data
202
bam
156
tsv
156
txt
107
tagAlign
95
fastq
87
bed narrowPeak
45
bigWig
9
bed broadPeak
9
hic
8
bedpe bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bedpe
Organism
857
Homo sapiens
Biosample type
859
tissue
549
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
musculature of body
28
blood vessel
28
vasculature
26
limb
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
783
AMP
47
KPMP
29
T1D
LungMap
Genome assembly (visualization)
GRCh38
1694
hg19
Lab
644
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
musculature of body
award.project!
LungMap
BIOSAMPLE
ASSAY
859 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
4
7
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
3
1
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
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