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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
single cell RNA-seq
135
ChIP-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
1
DNase-seq
Assay category
309
Transcription
135
DNA accessibility
135
DNA binding
22
DNA methylation
16
3D chromatin structure
Target of assay
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
98
August, 2017
93
February, 2021
66
May, 2022
60
February, 2023
54
October, 2019
47
September, 2023
31
March, 2020
25
February, 2020
19
April, 2020
16
July, 2019
13
November, 2017
8
January, 2021
8
May, 2020
6
October, 2017
4
July, 2018
3
December, 2019
3
March, 2019
3
May, 2023
2
April, 2019
2
January, 2018
2
May, 2021
2
November, 2020
1
August, 2022
1
May, 2019
1
November, 2018
1
November, 2019
Available data
159
tsv
157
txt
101
bed narrowPeak
70
tagAlign
60
bigWig
40
bam
33
fastq
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
732
Homo sapiens
Biosample type
734
tissue
520
primary cell
115
cell line
97
in vitro differentiated cells
7
stem cell
Organ
128
kidney
106
heart
92
bone element
92
pancreas
78
liver
53
eye
43
connective tissue
42
adipose tissue
37
brain
36
musculature of body
20
lung
15
epithelium
12
blood vessel
12
vasculature
9
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
639
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1752
hg19
Lab
502
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
target.investigated_as!
control
BIOSAMPLE
ASSAY
734 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
snDrop-seq
MeRIP-seq
DNase-seq
tissue
islet of Langerhans
35
32
46
7
4
3
1
1
2
kidney
64
1
49
6
1
1
1
bone element
84
liver
1
28
20
20
1
1
1
3
subcutaneous abdominal adipose tissue
31
3
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