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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
52
ATAC-seq
Assay category
66
DNA binding
52
DNA accessibility
Target of assay
55
histone
55
histone modification
33
broad histone mark
22
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
30
February, 2023
30
May, 2021
20
August, 2017
20
May, 2022
16
August, 2021
1
April, 2019
1
November, 2017
Available data
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
118
Homo sapiens
Biosample type
70
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
1
heart
Project
118
AMP
Genome assembly (visualization)
118
hg19
GRCh38
Lab
50
AMP-T2D consortium
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bam
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
20
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
islet of Langerhans
6
+ See 4 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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