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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
605
ChIP-seq
293
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
58
WGBS
55
pCHi-C
28
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
5
DNA accessibility
Date released
41
May, 2022
10
August, 2017
6
February, 2021
4
July, 2019
2
October, 2019
Available data
41
zippedFastqFolder
9
fastq
6
tsv
3
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
Organism
63
Homo sapiens
Biosample type
51
primary cell
12
tissue
Organ
49
epithelium
47
pancreas
5
liver
4
adipose tissue
4
connective tissue
2
heart
2
kidney
1
blood vessel
1
vasculature
Project
47
HPAP
16
AMP
Genome assembly (visualization)
GRCh38
5
hg19
Lab
47
Klaus Kaestner, Upenn
16
AMP-T2D consortium
assembly!
GRCh38
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
63 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
right lobe of liver
1
1
adipose tissue
1
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