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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
21
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
45
DNA binding
21
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
9
control
5
RNA binding protein
Date released
198
August, 2021
162
May, 2022
147
February, 2021
140
February, 2023
138
August, 2017
126
May, 2020
106
October, 2019
93
May, 2021
93
November, 2017
56
September, 2020
48
March, 2020
47
September, 2023
29
October, 2018
27
July, 2019
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
16
January, 2021
15
April, 2019
10
November, 2020
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
8
November, 2018
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
40
bigWig
bed narrowPeak
2
bed bed3+
1
bam
1
tagAlign
Organism
93
Homo sapiens
Biosample type
48
in vitro differentiated cells
27
primary cell
16
cell line
2
tissue
Organ
18
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
76
AMP
17
T1D
Genome assembly (visualization)
183
hg19
GRCh38
Lab
70
Kyle Gaulton, UCSD
23
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assembly!
GRCh38
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
5
pancreatic PP cell
1
primary cell
CD8-positive, alpha-beta T cell
3
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
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