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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
30
total RNA-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
136
DNA binding
31
Transcription
6
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
107
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
RNA binding protein
1
recombinant protein
Date released
64
November, 2017
35
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
144
bam
116
fastq
89
bigWig
bed narrowPeak
55
tagAlign
28
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
12
tsv
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tar
1
csv
1
hdf5
1
vcf
Organism
184
Homo sapiens
Biosample type
95
tissue
85
cell line
3
primary cell
1
in vitro differentiated cells
Organ
285
pancreas
217
epithelium
184
liver
147
kidney
126
heart
114
connective tissue
93
bone element
67
brain
65
adipose tissue
44
vasculature
42
blood vessel
29
musculature of body
28
eye
25
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
184
AMP
Genome assembly (visualization)
188
hg19
GRCh38
Lab
147
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assembly!
GRCh38
files.file_type!
bed narrowPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
1
3
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
69
9
2
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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