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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
41
WGBS
39
ATAC-seq
18
ChIP-seq
6
Hi-C
5
STARR-seq
1
whole genome sequencing assay
Assay category
177
Transcription
87
DNA accessibility
41
DNA methylation
18
DNA binding
6
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
134
May, 2022
76
February, 2023
56
September, 2020
39
February, 2021
26
August, 2021
3
October, 2022
1
March, 2019
Available data
159
fastq
153
zippedFastqFolder
tsv
14
bed narrowPeak
14
bigWig
5
bedpe bed3+
5
hic
3
cool
1
bedpe
1
vcf
Organism
335
Homo sapiens
Biosample type
308
primary cell
25
cell line
2
tissue
Organ
138
pancreas
136
epithelium
22
liver
2
kidney
Project
308
HPAP
27
AMP
Genome assembly (visualization)
20
hg19
GRCh38
Lab
910
AMP-T2D consortium
308
Klaus Kaestner, Upenn
163
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
30
audit script error
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
tsv
BIOSAMPLE
ASSAY
335 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
ChIP-seq
Hi-C
STARR-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
25
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
cell line
HepG2
18
1
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
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