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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
4
3D chromatin structure
2
Transcription
Date released
4
July, 2019
2
May, 2021
1
February, 2021
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
7
Homo sapiens
Biosample type
7
primary cell
6
in vitro differentiated cells
1
cell line
1
tissue
Organ
3
brain
2
blood vessel
2
connective tissue
2
epithelium
2
vasculature
1
liver
Project
7
AMP
Genome assembly (visualization)
GRCh38
30
hg19
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
7 results
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Hi-C
total RNA-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
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