Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
3
3D chromatin structure
2
Transcription
1
DNA accessibility
Date released
3
July, 2019
2
May, 2021
1
February, 2021
1
May, 2022
Available data
405
bam
381
fastq
231
bigWig
196
tsv
181
bed narrowPeak
161
txt
153
zippedFastqFolder
130
tagAlign
41
bigBed narrowPeak
39
bed broadPeak
22
bedpe bed3+
22
hic
18
bed bedMethyl
18
bigBed bedMethyl
18
bigBed broadPeak
8
csv
7
bed bed3+
5
bed bed3
4
tar
3
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
vcf
Organism
7
Homo sapiens
Biosample type
5
primary cell
1
cell line
1
tissue
Organ
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
musculature of body
Project
7
AMP
Genome assembly (visualization)
GRCh38
224
hg19
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assembly!
GRCh38
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
7 results
search-icon
table-tab-icon
Clear Filters
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
tissue
skeletal muscle tissue
1
Download