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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
5
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
33
DNA binding
10
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
4
August, 2017
4
October, 2019
2
July, 2019
1
November, 2018
Available data
415
bam
403
fastq
200
tsv
171
bigWig
161
txt
zippedFastqFolder
121
bed narrowPeak
68
tagAlign
43
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
15
bed broadPeak
14
bigBed broadPeak
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
43
Homo sapiens
Biosample type
32
cell line
5
tissue
4
primary cell
2
in vitro differentiated cells
Organ
32
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
vasculature
1
vein
Project
43
AMP
Genome assembly (visualization)
624
hg19
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
files.file_type!
zippedFastqFolder
target.investigated_as!
histone
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
32
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
in vitro differentiated cells
adipocyte
2
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