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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
4
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
31
DNA binding
9
DNA accessibility
Target of assay
30
transcription factor
4
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
29
November, 2017
4
August, 2017
3
October, 2019
2
July, 2019
1
May, 2019
1
November, 2018
Available data
408
bam
223
fastq
184
tsv
160
bigWig
152
tagAlign
99
bed narrowPeak
95
txt
44
bigBed narrowPeak
39
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
18
bigBed broadPeak
16
hic
11
bed bed3+
10
bed bed3
8
csv
4
bed bedgraph
4
hdf5
tar
2
ibed
Organism
40
Homo sapiens
Biosample type
29
cell line
6
tissue
3
primary cell
2
in vitro differentiated cells
Organ
29
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
brain
1
kidney
1
limb
1
musculature of body
Project
40
AMP
Genome assembly (visualization)
GRCh38
959
hg19
Lab
40
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
files.file_type!
tar
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
29
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
2
in vitro differentiated cells
adipocyte
2
See all biosamples
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