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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
5
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
33
DNA binding
10
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
32
November, 2017
4
August, 2017
4
October, 2019
2
July, 2019
1
November, 2018
Available data
429
bam
405
fastq
224
bigWig
197
tsv
171
bed narrowPeak
160
txt
153
zippedFastqFolder
137
tagAlign
43
bigBed narrowPeak
27
bed broadPeak
21
bedpe bed3+
20
hic
18
bigBed broadPeak
16
bed bedMethyl
16
bigBed bedMethyl
14
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
43
Homo sapiens
Biosample type
32
cell line
5
tissue
4
primary cell
2
in vitro differentiated cells
Organ
32
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
musculature of body
1
vasculature
1
vein
Project
43
AMP
Genome assembly (visualization)
GRCh38
916
hg19
Lab
43
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
32
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
in vitro differentiated cells
adipocyte
2
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