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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
3
ATAC-seq
3
FAIRE-seq
2
DNase-seq
Assay category
34
DNA binding
8
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
4
October, 2019
3
August, 2017
2
July, 2019
1
May, 2019
Available data
365
bam
293
fastq
227
bigWig
189
tsv
159
bed narrowPeak
155
txt
141
tagAlign
73
zippedFastqFolder
42
bigBed narrowPeak
33
bed broadPeak
18
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
16
bedpe bed3+
15
bed bed3+
15
hic
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
vcf
Organism
42
Homo sapiens
Biosample type
32
cell line
4
primary cell
4
tissue
2
in vitro differentiated cells
Organ
32
liver
3
connective tissue
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
42
AMP
Genome assembly (visualization)
GRCh38
874
hg19
Lab
42
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
organ_slims!
pancreas
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
cell line
HepG2
32
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
tissue
adipose tissue
1
frontal cortex
1
kidney
1
muscle of leg
1
in vitro differentiated cells
adipocyte
2
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