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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
FAIRE-seq
3
ATAC-seq
2
DNase-seq
1
ChIP-seq
Assay category
10
DNA accessibility
1
DNA binding
Target of assay
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
4
October, 2019
3
August, 2017
2
July, 2019
1
May, 2019
1
November, 2018
Available data
391
bam
365
fastq
200
tsv
191
bigWig
161
txt
153
zippedFastqFolder
152
tagAlign
141
bed narrowPeak
27
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
11
bigBed narrowPeak
10
bed bed3
8
csv
7
bed bedgraph
5
bigBed broadPeak
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
11
Homo sapiens
Biosample type
6
tissue
3
primary cell
2
in vitro differentiated cells
Organ
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
11
AMP
Genome assembly (visualization)
GRCh38
562
hg19
Lab
11
AMP-T2D consortium
assembly!
GRCh38
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
11 results
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FAIRE-seq
ATAC-seq
DNase-seq
ChIP-seq
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
2
endothelial cell of umbilical vein
1
in vitro differentiated cells
adipocyte
2
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