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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
8
Transcription
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
6
February, 2021
3
November, 2017
1
November, 2018
1
October, 2019
1
September, 2018
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
12
Homo sapiens
Biosample type
6
tissue
3
cell line
3
primary cell
Organ
5
kidney
4
liver
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
12
AMP
Genome assembly (visualization)
4
hg19
Lab
12
AMP-T2D consortium
Audit category:
5
audit script error
assembly!
GRCh38
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
12 results
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Clear Filters
single cell RNA-seq
ChIP-seq
FAIRE-seq
tissue
kidney
5
liver
1
cell line
HepG2
3
primary cell
pancreatic cell
2
endothelial cell of umbilical vein
1
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