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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
18
ATAC-seq
4
RRBS
2
FAIRE-seq
1
DNase-seq
Assay category
56
DNA binding
21
DNA accessibility
4
DNA methylation
Target of assay
37
transcription factor
17
control
5
RNA binding protein
2
chromatin remodeller
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
54
November, 2017
18
May, 2022
8
August, 2017
1
November, 2018
Available data
234
bigWig
185
bed narrowPeak
138
bam
81
fastq
44
bigBed narrowPeak
39
bed broadPeak
33
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
7
bed bedgraph
4
hdf5
4
tar
4
txt
3
cool
2
ibed
2
tsv
1
bedpe
Organism
81
Homo sapiens
Biosample type
51
cell line
23
tissue
7
primary cell
Organ
52
liver
20
pancreas
3
brain
2
epithelium
2
musculature of body
2
vasculature
1
blood vessel
Project
81
AMP
Genome assembly (visualization)
1008
hg19
GRCh38
5
hg18
Lab
63
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
ATAC-seq
RRBS
FAIRE-seq
DNase-seq
cell line
HepG2
51
tissue
islet of Langerhans
18
1
skeletal muscle tissue
2
liver
1
pancreas
1
primary cell
skeletal muscle myoblast
2
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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