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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
Assay category
7
3D chromatin structure
Date released
4
July, 2019
3
October, 2022
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
7
Homo sapiens
Biosample type
7
primary cell
Organ
5
epithelium
3
brain
3
pancreas
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
4
AMP
3
HPAP
Genome assembly (visualization)
8
hg19
GRCh38
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
7 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
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