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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
Hi-C
1
DNase-seq
Assay category
3
3D chromatin structure
3
DNA binding
1
DNA accessibility
Target of assay
2
broad histone mark
2
histone
2
histone modification
1
RNA binding protein
1
transcription factor
Date released
3
July, 2019
2
August, 2017
2
October, 2019
Available data
285
fastq
283
bam
188
tsv
161
txt
153
zippedFastqFolder
145
bigWig
111
bed narrowPeak
97
tagAlign
26
bed broadPeak
21
bedpe bed3+
20
hic
17
bed bedMethyl
17
bigBed bedMethyl
13
bed bed3+
12
bigBed narrowPeak
10
bed bed3
7
bed bedgraph
7
csv
4
bigBed broadPeak
3
cool
3
hdf5
2
ibed
1
bedpe
1
tar
Organism
7
Homo sapiens
Biosample type
7
primary cell
Organ
liver
4
blood vessel
4
epithelium
4
vasculature
3
brain
2
vein
1
connective tissue
Project
7
AMP
Genome assembly (visualization)
GRCh38
203
hg19
Lab
7
AMP-T2D consortium
assembly!
GRCh38
organ_slims!
liver
BIOSAMPLE
ASSAY
7 results
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ChIP-seq
Hi-C
DNase-seq
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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