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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
2
August, 2021
1
March, 2019
1
November, 2019
Available data
400
bam
331
fastq
230
bigWig
190
tsv
172
bed narrowPeak
161
txt
150
tagAlign
73
zippedFastqFolder
43
bigBed narrowPeak
38
bed broadPeak
18
bedpe bed3+
16
bigBed broadPeak
16
hic
13
bed bed3+
13
bed bedMethyl
13
bigBed bedMethyl
10
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
16
Homo sapiens
Biosample type
11
tissue
4
in vitro differentiated cells
1
cell line
Organ
7
pancreas
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
16
AMP
Genome assembly (visualization)
16
hg19
GRCh38
Lab
13
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
assembly!
GRCh38
organ_slims!
epithelium
BIOSAMPLE
ASSAY
16 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
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