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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA sequencing
Date released
4
February, 2023
4
July, 2019
3
August, 2021
2
February, 2021
2
May, 2021
1
May, 2022
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
16
Homo sapiens
Biosample type
7
primary cell
6
in vitro differentiated cells
2
cell line
1
tissue
Organ
8
connective tissue
3
brain
3
liver
2
blood vessel
2
epithelium
2
vasculature
1
musculature of body
Project
16
AMP
Genome assembly (visualization)
GRCh38
250
hg19
Lab
11
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
16 results
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ATAC-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
whole genome sequencing assay
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
1
tissue
skeletal muscle tissue
1
See all biosamples
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