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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
1
whole genome sequencing assay
Assay category
108
DNA binding
DNA accessibility
1
DNA sequencing
Target of assay
64
histone
64
histone modification
44
transcription factor
33
broad histone mark
31
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
33
November, 2017
30
May, 2021
21
August, 2017
15
August, 2021
8
May, 2020
1
April, 2019
1
May, 2019
Available data
362
bam
358
fastq
186
tsv
157
txt
152
tagAlign
147
bigWig
108
bed narrowPeak
93
zippedFastqFolder
38
bed broadPeak
34
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
17
bigBed broadPeak
10
bed bed3+
8
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
109
Homo sapiens
Biosample type
47
cell line
31
primary cell
31
tissue
Organ
55
liver
14
musculature of body
6
pancreas
1
adipose tissue
1
brain
1
connective tissue
1
heart
1
limb
Project
109
AMP
Genome assembly (visualization)
1228
hg19
GRCh38
Lab
64
AMP-T2D consortium
30
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
whole genome sequencing assay
cell line
HepG2
46
1
primary cell
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
1
tissue
skeletal muscle tissue
13
liver
8
islet of Langerhans
6
cingulate gyrus
1
heart left ventricle
1
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