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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
152
single cell RNA-seq
100
ATAC-seq
88
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
7
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
190
Transcription
Date released
81
February, 2023
59
August, 2021
26
May, 2022
16
September, 2020
8
May, 2021
Available data
98
fastq
55
txt
10
tsv
6
bam
2
bed bed3+
2
bigWig
Organism
190
Homo sapiens
Biosample type
94
primary cell
82
tissue
9
cell line
5
in vitro differentiated cells
Organ
66
pancreas
53
epithelium
49
kidney
29
liver
Project
93
AMP
92
HPAP
5
T1D
Genome assembly (visualization)
98
hg19
GRCh38
Lab
92
Klaus Kaestner, Upenn
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
19
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
assembly!
GRCh38
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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