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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
107
single cell RNA-seq
87
RNA microarray
53
total RNA-seq
51
ATAC-seq
24
pCHi-C
13
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
1
DNase-seq
Assay category
317
DNA binding
160
Transcription
58
DNA accessibility
22
DNA methylation
13
3D chromatin structure
Target of assay
182
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
99
August, 2021
93
February, 2021
81
October, 2019
42
February, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
4
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
January, 2019
1
November, 2019
Available data
179
bam
158
tsv
122
tagAlign
94
txt
72
fastq
63
bed narrowPeak
40
bigWig
21
bed broadPeak
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
Organism
682
Homo sapiens
Biosample type
684
tissue
179
primary cell
151
cell line
75
in vitro differentiated cells
5
stem cell
Organ
122
heart
92
bone element
83
liver
67
connective tissue
66
adipose tissue
62
brain
59
pancreas
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
kidney
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
682
AMP
2
T1D
Genome assembly (visualization)
GRCh38
1712
hg19
Lab
684
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
684 results
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ChIP-seq
single cell RNA-seq
RNA microarray
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
snDrop-seq
snATAC-seq
DNase-seq
tissue
islet of Langerhans
46
20
15
4
1
1
1
1
bone element
84
liver
70
1
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
7
18
1
1
1
2
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