Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
28
ATAC-seq
5
FAIRE-seq
2
DNase-seq
Assay category
64
DNA binding
35
DNA accessibility
Target of assay
33
transcription factor
31
histone
31
histone modification
19
narrow histone mark
12
broad histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
33
November, 2017
28
February, 2023
24
August, 2017
8
May, 2020
2
July, 2019
1
April, 2019
1
May, 2019
1
November, 2018
1
October, 2019
Available data
408
bam
223
fastq
184
tsv
160
bigWig
152
tagAlign
99
bed narrowPeak
95
txt
44
bigBed narrowPeak
39
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
18
bigBed broadPeak
16
hic
11
bed bed3+
10
bed bed3
8
csv
4
bed bedgraph
4
hdf5
4
tar
2
ibed
Organism
99
Homo sapiens
Biosample type
63
tissue
32
cell line
4
primary cell
Organ
40
liver
27
eye
14
musculature of body
13
epithelium
8
pancreas
2
adipose tissue
2
brain
2
connective tissue
1
blood vessel
1
heart
1
kidney
1
limb
1
vasculature
1
vein
Project
99
AMP
Genome assembly (visualization)
GRCh38
1428
hg19
Lab
99
AMP-T2D consortium
48
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
99 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
liver
8
islet of Langerhans
6
1
+ See 8 more…
cell line
HepG2
32
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
See all biosamples
Download