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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
85
single cell RNA-seq
59
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
197
Transcription
107
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
174
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
3
October, 2022
Available data
159
fastq
153
zippedFastqFolder
20
bed narrowPeak
20
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
354
Homo sapiens
Biosample type
314
primary cell
40
tissue
Organ
142
epithelium
142
pancreas
40
liver
Project
314
HPAP
40
AMP
Genome assembly (visualization)
23
hg19
GRCh38
Lab
1094
AMP-T2D consortium
314
Klaus Kaestner, Upenn
163
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
30
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
354 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
22
31
1
pancreatic beta cell
11
13
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
liver
20
20
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