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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
1
ChIP-seq
1
Hi-C
Assay category
6
DNA accessibility
1
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
3
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
July, 2019
Available data
28
bam
26
fastq
22
tagAlign
8
bed bed3+
8
bigWig
5
bed bed3
4
bed bedgraph
4
bed narrowPeak
4
tsv
3
bigBed narrowPeak
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
tissue
1
primary cell
Organ
94
liver
15
musculature of body
12
pancreas
9
epithelium
8
brain
8
connective tissue
7
vasculature
6
blood vessel
3
adipose tissue
3
vein
1
blood
1
bodily fluid
1
embryo
1
heart
1
kidney
1
limb
Project
8
AMP
Genome assembly (visualization)
567
hg19
GRCh38
Lab
6
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
assembly!
GRCh38
month_released!
December, 2019
BIOSAMPLE
ASSAY
8 results
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ATAC-seq
ChIP-seq
Hi-C
in vitro differentiated cells
adipocyte
3
osteoblast
1
tissue
adipose tissue
2
subcutaneous abdominal adipose tissue
1
primary cell
brain pericyte
1
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