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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
30
total RNA-seq
20
ATAC-seq
3
Hi-C
3
WGBS
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
DNA binding
31
Transcription
21
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
35
August, 2017
32
August, 2021
32
May, 2020
13
December, 2017
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
93
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
257
Homo sapiens
Biosample type
133
cell line
122
tissue
1
in vitro differentiated cells
1
primary cell
Organ
309
pancreas
257
liver
222
epithelium
144
kidney
123
heart
116
connective tissue
93
bone element
67
adipose tissue
63
brain
54
eye
41
vasculature
40
blood vessel
38
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
257
AMP
Genome assembly (visualization)
616
hg19
GRCh38
Lab
186
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
month_released!
July, 2019
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
tissue
liver
70
20
20
1
3
1
1
1
right lobe of liver
3
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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