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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
47
WGBS
39
ATAC-seq
3
Hi-C
Assay category
177
Transcription
87
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
3
October, 2022
Available data
159
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
314
Homo sapiens
Biosample type
314
primary cell
Organ
142
epithelium
142
pancreas
Project
314
HPAP
Genome assembly (visualization)
GRCh38
3
hg19
Lab
1094
AMP-T2D consortium
314
Klaus Kaestner, Upenn
163
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
Audit category:
30
audit script error
assembly!
GRCh38
month_released!
March, 2019
BIOSAMPLE
ASSAY
314 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
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