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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
ChIP-seq
3
snDrop-seq
Assay category
31
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
212
August, 2021
199
May, 2022
166
February, 2023
162
August, 2017
145
February, 2021
134
May, 2020
126
November, 2017
121
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
October, 2018
25
February, 2020
25
July, 2019
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
89
txt
45
fastq
14
tsv
6
csv
4
bam
4
bed bedgraph
3
tagAlign
bed bed3+
Organism
145
Homo sapiens
Biosample type
93
tissue
45
primary cell
4
in vitro differentiated cells
3
cell line
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
4
connective tissue
2
artery
2
blood vessel
2
heart
2
vasculature
1
liver
Project
100
AMP
45
HPAP
Genome assembly (visualization)
572
hg19
GRCh38
Lab
100
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
assembly!
GRCh38
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
145 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snDrop-seq
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
in vitro differentiated cells
adipocyte
4
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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