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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
19
ChIP-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
2
pCHi-C
Assay category
31
DNA accessibility
19
DNA binding
18
Transcription
6
DNA methylation
Target of assay
17
control
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
89
txt
45
fastq
19
bam
14
tsv
6
csv
4
bed bedgraph
3
tagAlign
2
bed bed3+
1
bed narrowPeak
1
bigWig
Organism
163
Homo sapiens
Biosample type
109
tissue
46
primary cell
4
cell line
4
in vitro differentiated cells
Organ
84
bone element
13
heart
13
kidney
6
epithelium
6
pancreas
5
connective tissue
2
artery
2
blood vessel
2
liver
2
vasculature
Project
118
AMP
45
HPAP
Genome assembly (visualization)
639
hg19
GRCh38
Lab
118
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
163 results
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Clear Filters
RNA microarray
snATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
5
heart left ventricle
7
heart
2
heart right ventricle
2
+ See 4 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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