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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
45
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
RRBS
8
Hi-C
2
FAIRE-seq
Assay category
101
DNA accessibility
60
Transcription
45
DNA methylation
8
3D chromatin structure
Date released
214
August, 2021
200
May, 2022
170
February, 2023
156
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
14
July, 2019
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
40
bed narrowPeak
27
bam
26
bigWig
24
fastq
7
txt
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
214
Homo sapiens
Biosample type
138
primary cell
76
tissue
Organ
104
pancreas
82
epithelium
42
liver
6
musculature of body
4
brain
4
limb
3
blood vessel
3
vasculature
2
heart
1
connective tissue
1
kidney
Project
134
HPAP
80
AMP
Genome assembly (visualization)
115
hg19
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
16
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
assay_title!
RRBS
BIOSAMPLE
ASSAY
214 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
1
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tissue
liver
20
20
islet of Langerhans
18
6
gastrocnemius medialis
4
heart left ventricle
2
skeletal muscle tissue
1
1
+ See 4 more…
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