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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
40
single cell RNA-seq
25
total RNA-seq
21
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
75
DNA binding
65
Transcription
21
DNA accessibility
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
9
control
5
RNA binding protein
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
40
bigWig
38
fastq
30
bed narrowPeak
19
zippedFastqFolder
2
bed bed3+
1
bam
1
tagAlign
Organism
179
Homo sapiens
Biosample type
113
primary cell
48
in vitro differentiated cells
16
cell line
2
tissue
Organ
34
pancreas
33
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
106
AMP
56
HPAP
17
T1D
Genome assembly (visualization)
316
hg19
GRCh38
Lab
100
Kyle Gaulton, UCSD
56
Klaus Kaestner, Upenn
23
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
179 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
Langerhans cell
40
CD8-positive, alpha-beta T cell
33
2
1
pancreatic alpha cell
15
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
+ See 13 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
pancreatic PP cell
1
cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
See all biosamples
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